GSD documentation

Version 1.5.2

See the README GSD’s bitbucket page for an overview. Also use the bitbucket project page to report issues.

• Examples
  • HOOMD examples
    • Define a snapshot
    • Create a hoomd gsd file
    • Append frames to a gsd file
    • Randomly index frames
    • Slicing
    • Pure python reader
    • Access state data
  • File layer examples
    • Open a gsd file
    • Write data
    • Read data
    • Test if a chunk exists
    • Read-only access
    • Access file metadata
    • Open a file in read/write mode
    • Write a file in append mode
    • Use as a context manager
    • Store string chunks
    • Truncate
• gsd python package
  • Submodules
    • gsd.fl module
    • gsd.pygsd module
    • gsd.hoomd module
  • Package contents
  • Logging
• C API
  • Functions
  • Constants
    • Data types
    • Open flags
  • Data structures
• Specification
  • File layer
    • Use-cases
    • Non use-cases
    • Specifications
    • Dependencies
    • File format
    • API and implementation thoughts
    • Failure modes
  • HOOMD Schema
    • Use-cases
    • Data chunks
    • Configuration
    • Particle data
    • Topology
    • State data
• Scripts
  • hoomdxml2gsd.py
• Benchmarks
  • SSD
  • NFS
  • HDD
• License
• Index