Index Symbols | _ | A | B | C | D | E | F | G | H | I | L | M | N | O | P | R | S | T | U | V | W Symbols --mode read command line option --schema read command line option -m read command line option -s read command line option [anonymous] (C enum), [1] [anonymous].GSD_NAME_SIZE (C enumerator) [anonymous].GSD_RESERVED_BYTES (C enumerator) _ __enter__() (gsd.hoomd.HOOMDTrajectory method) (gsd.pygsd.GSDFile method) __exit__() (gsd.hoomd.HOOMDTrajectory method) (gsd.pygsd.GSDFile method) __getitem__() (gsd.hoomd.HOOMDTrajectory method) __getstate__() (gsd.pygsd.GSDFile method) __iter__() (gsd.hoomd.HOOMDTrajectory method) __len__() (gsd.hoomd.HOOMDTrajectory method) __setstate__() (gsd.pygsd.GSDFile method) A angles (gsd.hoomd.Frame attribute) angles/group (data chunk) angles/N (data chunk) angles/typeid (data chunk) angles/types (data chunk) angmom (gsd.hoomd.ParticleData attribute) append() (gsd.hoomd.HOOMDTrajectory method) application (gsd.fl.GSDFile attribute) (gsd.pygsd.GSDFile property) B body (gsd.hoomd.ParticleData attribute) BondData (class in gsd.hoomd) bonds (gsd.hoomd.Frame attribute) bonds/group (data chunk) bonds/N (data chunk) bonds/typeid (data chunk) bonds/types (data chunk) box (gsd.hoomd.ConfigurationData property) C charge (gsd.hoomd.ParticleData attribute) chunk_exists() (gsd.fl.GSDFile method) (gsd.pygsd.GSDFile method) close() (gsd.fl.GSDFile method) (gsd.hoomd.HOOMDTrajectory method) (gsd.pygsd.GSDFile method) configuration (gsd.hoomd.Frame attribute) configuration/box (data chunk) configuration/dimensions (data chunk) configuration/step (data chunk) ConfigurationData (class in gsd.hoomd) ConstraintData (class in gsd.hoomd) constraints (gsd.hoomd.Frame attribute) constraints/group (data chunk) constraints/N (data chunk) constraints/value (data chunk) D diameter (gsd.hoomd.ParticleData attribute) dihedrals (gsd.hoomd.Frame attribute) dihedrals/group (data chunk) dihedrals/N (data chunk) dihedrals/typeid (data chunk) dihedrals/types (data chunk) dimensions (gsd.hoomd.ConfigurationData attribute) E end_frame() (gsd.fl.GSDFile method) (gsd.pygsd.GSDFile method) extend() (gsd.hoomd.HOOMDTrajectory method) F file (gsd.hoomd.HOOMDTrajectory property) (gsd.pygsd.GSDFile property) find_matching_chunk_names() (gsd.fl.GSDFile method) (gsd.pygsd.GSDFile method) flush() (gsd.fl.GSDFile method) Frame (class in gsd.hoomd) G group (gsd.hoomd.BondData attribute) (gsd.hoomd.ConstraintData attribute) gsd module gsd.__main__ module gsd.fl module gsd.hoomd module gsd.pygsd module gsd.version module gsd_byte_buffer (C struct) gsd_byte_buffer.data (C var) gsd_byte_buffer.reserved (C var) gsd_byte_buffer.size (C var) gsd_close (C function) gsd_create (C function) gsd_create_and_open (C function) gsd_end_frame (C function) gsd_error (C enum) gsd_error.GSD_ERROR_FILE_CORRUPT (C enumerator) gsd_error.GSD_ERROR_FILE_MUST_BE_READABLE (C enumerator) gsd_error.GSD_ERROR_FILE_MUST_BE_WRITABLE (C enumerator) gsd_error.GSD_ERROR_INVALID_ARGUMENT (C enumerator) gsd_error.GSD_ERROR_INVALID_GSD_FILE_VERSION (C enumerator) gsd_error.GSD_ERROR_IO (C enumerator) gsd_error.GSD_ERROR_MEMORY_ALLOCATION_FAILED (C enumerator) gsd_error.GSD_ERROR_NAMELIST_FULL (C enumerator) gsd_error.GSD_ERROR_NOT_A_GSD_FILE (C enumerator) gsd_error.GSD_SUCCESS (C enumerator) gsd_find_chunk (C function) gsd_find_matching_chunk_name (C function) gsd_flush (C function) gsd_get_index_entries_to_buffer (C function) gsd_get_maximum_write_buffer_size (C function) gsd_get_nframes (C function) gsd_handle (C struct) gsd_handle.buffer_index (C var) gsd_handle.cur_frame (C var) gsd_handle.fd (C var) gsd_handle.file_index (C var) gsd_handle.file_names (C var) gsd_handle.file_size (C var) gsd_handle.frame_index (C var) gsd_handle.frame_names (C var) gsd_handle.header (C var) gsd_handle.index_entries_to_buffer (C var) gsd_handle.maximum_write_buffer_size (C var) gsd_handle.name_map (C var) gsd_handle.open_flags (C var) gsd_handle.pending_index_entries (C var) gsd_handle.write_buffer (C var) gsd_header (C struct) gsd_header.application (C var) gsd_header.gsd_version (C var) gsd_header.index_allocated_entries (C var) gsd_header.index_location (C var) gsd_header.magic (C var) gsd_header.namelist_allocated_entries (C var) gsd_header.namelist_location (C var) gsd_header.reserved (C var) gsd_header.schema (C var) gsd_header.schema_version (C var) gsd_index_buffer (C struct) gsd_index_buffer.data (C var) gsd_index_buffer.mapped_data (C var) gsd_index_buffer.mapped_len (C var) gsd_index_buffer.reserved (C var) gsd_index_buffer.size (C var) gsd_index_entry (C struct) gsd_index_entry.flags (C var) gsd_index_entry.frame (C var) gsd_index_entry.id (C var) gsd_index_entry.location (C var) gsd_index_entry.M (C var) gsd_index_entry.N (C var) gsd_index_entry.type (C var) gsd_make_version (C function) gsd_name_buffer (C struct) gsd_name_buffer.data (C var) gsd_name_buffer.n_names (C var) gsd_name_id_map (C struct) gsd_name_id_map.size (C var) gsd_name_id_map.v (C var) gsd_name_id_pair (C struct) gsd_name_id_pair.id (C var) gsd_name_id_pair.name (C var) gsd_name_id_pair.next (C var) gsd_open (C function) gsd_open_flag (C enum) gsd_open_flag.GSD_OPEN_APPEND (C enumerator) gsd_open_flag.GSD_OPEN_READONLY (C enumerator) gsd_open_flag.GSD_OPEN_READWRITE (C enumerator) gsd_read_chunk (C function) gsd_set_index_entries_to_buffer (C function) gsd_set_maximum_write_buffer_size (C function) gsd_sizeof_type (C function) gsd_truncate (C function) gsd_type (C enum) gsd_type.GSD_TYPE_DOUBLE (C enumerator) gsd_type.GSD_TYPE_FLOAT (C enumerator) gsd_type.GSD_TYPE_INT16 (C enumerator) gsd_type.GSD_TYPE_INT32 (C enumerator) gsd_type.GSD_TYPE_INT64 (C enumerator) gsd_type.GSD_TYPE_INT8 (C enumerator) gsd_type.GSD_TYPE_UINT16 (C enumerator) gsd_type.GSD_TYPE_UINT32 (C enumerator) gsd_type.GSD_TYPE_UINT64 (C enumerator) gsd_type.GSD_TYPE_UINT8 (C enumerator) gsd_upgrade (C function) gsd_version (gsd.fl.GSDFile attribute) (gsd.pygsd.GSDFile property) gsd_write_chunk (C function) GSDFile (class in gsd.fl) (class in gsd.pygsd) H HOOMDTrajectory (class in gsd.hoomd) I image (gsd.hoomd.ParticleData attribute) impropers (gsd.hoomd.Frame attribute) impropers/group (data chunk) impropers/N (data chunk) impropers/typeid (data chunk) impropers/types (data chunk) index_entries_to_buffer (gsd.fl.GSDFile attribute) int64_t (C type) L log (gsd.hoomd.Frame attribute) log/bonds/user_defined (data chunk) log/particles/user_defined (data chunk) log/user_defined (data chunk) M mass (gsd.hoomd.ParticleData attribute) maximum_write_buffer_size (gsd.fl.GSDFile attribute) mode (gsd.fl.GSDFile attribute) (gsd.pygsd.GSDFile property) module gsd gsd.__main__ gsd.fl gsd.hoomd gsd.pygsd gsd.version moment_inertia (gsd.hoomd.ParticleData attribute) N N (gsd.hoomd.BondData attribute) (gsd.hoomd.ConstraintData attribute) (gsd.hoomd.ParticleData attribute) name (gsd.fl.GSDFile attribute) (gsd.pygsd.GSDFile property) nframes (gsd.fl.GSDFile attribute) (gsd.pygsd.GSDFile property) O open() (in module gsd.fl) (in module gsd.hoomd) orientation (gsd.hoomd.ParticleData attribute) P pairs (gsd.hoomd.Frame attribute) pairs/group (data chunk) pairs/N (data chunk) pairs/typeid (data chunk) pairs/types (data chunk) ParticleData (class in gsd.hoomd) particles (gsd.hoomd.Frame attribute) particles/angmom (data chunk) particles/body (data chunk) particles/charge (data chunk) particles/diameter (data chunk) particles/image (data chunk) particles/mass (data chunk) particles/moment_inertia (data chunk) particles/N (data chunk) particles/orientation (data chunk) particles/position (data chunk) particles/type_shapes (data chunk) particles/typeid (data chunk) particles/types (data chunk) particles/velocity (data chunk) position (gsd.hoomd.ParticleData attribute) R read command line option --mode --schema -m -s read_chunk() (gsd.fl.GSDFile method) (gsd.pygsd.GSDFile method) read_log() (in module gsd.hoomd) S schema (gsd.fl.GSDFile attribute) (gsd.pygsd.GSDFile property) schema_version (gsd.fl.GSDFile attribute) (gsd.pygsd.GSDFile property) size_t (C type) state (gsd.hoomd.Frame attribute) state/hpmc/convex_polygon/N (data chunk) state/hpmc/convex_polygon/vertices (data chunk) state/hpmc/convex_polyhedron/N (data chunk) state/hpmc/convex_polyhedron/vertices (data chunk) state/hpmc/convex_spheropolygon/N (data chunk) state/hpmc/convex_spheropolygon/sweep_radius (data chunk) state/hpmc/convex_spheropolygon/vertices (data chunk) state/hpmc/convex_spheropolyhedron/N (data chunk) state/hpmc/convex_spheropolyhedron/sweep_radius (data chunk) state/hpmc/convex_spheropolyhedron/vertices (data chunk) state/hpmc/ellipsoid/a (data chunk) state/hpmc/ellipsoid/b (data chunk) state/hpmc/ellipsoid/c (data chunk) state/hpmc/integrate/a (data chunk) state/hpmc/integrate/d (data chunk) state/hpmc/simple_polygon/N (data chunk) state/hpmc/simple_polygon/vertices (data chunk) state/hpmc/sphere/orientable (data chunk) state/hpmc/sphere/radius (data chunk) step (gsd.hoomd.ConfigurationData attribute) T truncate() (gsd.fl.GSDFile method) (gsd.hoomd.HOOMDTrajectory method) (gsd.pygsd.GSDFile method) type_shapes (gsd.hoomd.ParticleData attribute) typeid (gsd.hoomd.BondData attribute) (gsd.hoomd.ParticleData attribute) types (gsd.hoomd.BondData attribute) (gsd.hoomd.ParticleData attribute) U uint16_t (C type) uint32_t (C type) uint64_t (C type) uint8_t (C type) upgrade() (gsd.fl.GSDFile method) V validate() (gsd.hoomd.BondData method) (gsd.hoomd.ConfigurationData method) (gsd.hoomd.ConstraintData method) (gsd.hoomd.Frame method) (gsd.hoomd.ParticleData method) value (gsd.hoomd.ConstraintData attribute) velocity (gsd.hoomd.ParticleData attribute) version (in module gsd.version) W write_chunk() (gsd.fl.GSDFile method) (gsd.pygsd.GSDFile method)